Plant formins homepage

Arabidopsis formin homologues: genes, sequences and clones


This page has been updated to include the Dec 3, 2007 Uniprot release. For people interested in sorting out sequence predictions from various times, the old version has been archived here.

Click gene names for a graphical view of locus structure and details of gene prediction as published in (Cvrckova et al., 2004) and the 2005 version of this site. Gene names on orange background indicate loci where current annotation (December 2007 Uniprot) represents an improvement against the version published in the above cited paper, genes on a darker yellow background denote loci where the two models differ but there is no cDNA evidence in favor of any of them (in such casese I prefer the official annotation but show our prediction as well). TAIR entries different from the recent Uniprot reannotation are shown on darker blue or yellow background.

A file of annotated locus structures from the above cited paper can be accessed here.

Click here for more information on proteins encoded by these loci, here for compilation of protein sequences as published in Cvrckova et al., 2004 (thus partially obsolete).

Gene

Synonyms

Number of coding exons

AGI locus (BAC locus)

Click for current TAIR view

Uniprot protein prediction

Genomic sequence(s)

cDNA sequence(s) **

Notes

AtFH1

AFH1, AtFORMIN8
4
At3g25500 (MWL2.16) FH1_ARATH

AB025639

R30345, Z18512, AV544190, AV546860, AV567287, AV548463, AV528187, AV552669, AV522684, AV546377, Z17974, AF174427  

AtFH2

AtFORMIN2
4
At2g43800 (F18O19.5) FH2_ARATH AC002333 AV545883, AI997606, (NM_129942)

AtFH3

AtFORMIN3
6
At4g15200 (FCAALL.218) FH3_ARATH Z97338 AV557654,(BK004092) errors in genomic sequence, 5´end may be missing

AtFH4

AtFORMIN4
2
At1g24150 (F3I6.8) FH4_ARATH AC002396 AI998115, BE526568, (BK004101) error in genomic sequence

AtFH5

AtFORMIN5
6-7
At5g54650 (MRB17.15) FH5_ARATH AB016879 BE522210, AV548458, AV528139, AY042801 alternative splicing

AtFH6

AtFORMIN6
4
At5g67470 (K9I9.3) FH6_ARATH AB013390 F19772, AV532694, AV566231, AY337456

AtFH7

AtFORMIN7
2
At1g59910 (F23H11.22) FH7_ARATH AC007258 AV542102, AV540964, AV548598, BT010460

AtFH8

AtFORMIN1
2
At1g70140 (F20P5.14) FH8_ARATH AC002062 T43335, AA395204, AY050956, (NM_105682)

AtFH9

4
At5g48360 (K23F3.8) FH9_ARATH AP000372 BE526931, AK118458

AtFH10

3
At3g07540 (F21O3.25) FH10_ARATH AC009853 AV563517, AY050396

AtFH11

4
At3g05470 (F22F7.8) FH11_ARATH AC009606 none so far, (NM_111420)

AtFH12

12
At1g42980 (F13A11.4) FH12_ARATH AC068324 BX817649, (NM_103457) frameshift in the full-length cDNA

AtFH13

14
At5g58160 (MCK7.3) FH13_ARATH AB019228 N65121, AA394985, (BK004099)

AtFH14

17
At1g31810 (F5M6.18) FH14_ARATH AC079041 AV528978, AV548682, AV548850, (BK004098)

AtFH15*

13+12
At5g07650 (MBK20.9)

FH15A_ARATH, FH15B_ARATH

AB010070 AV543211, (BK004097), (BK004096), (NM_120847) the locus may span two genes, AtFH15a and AtFH15b

AtFH16*

16
At5g07770 (MBK20.23) FH16_ARATH AB010070 + AB005249; NC_003076 (reference) AV526999, AV527418, AV520899, AV529184, AV520610, (NM_120859)

AtFH17

16
At3g32400 (F1D9.13) FH17_ARATH AP002460 none so far, (BK004094) located within a cluster of pseudogenes

AtFH18

16
At2g25050 (F27C12.3) FH18_ARATH AC006585 none so far, (NM_128062)

AtFH19*

14
At5g07780 (MXM12.2) FH19_ARATH AB005249 AI998622, AK221526

AtFH20*

15

At5g07740 (MBK20.20)

FH20_ARATH AB010070 AV558046, BE525429, AV554850, (BK004102) alternative splicing

AtFH21*

24
At5g07760 (MBK20.22) FH21A_ARATH, FH21B_ARATH AB010070 none so far, (NM_120858) the locus may span two genes, AtFH21a and AtFH21b

*Genes within the Chromosome 5 formin cluster.

** This is not necessarily a full list, rather a documentation of the data (incl. selected ESTs) used to reconstruct the gene structures back in 2004 (exceptions, if any, will be noted in the locus structure pages). Empirically sequenced full-length cDNAs in bold, theoretical gene models in brackets.