Click gene names for a graphical view of locus structure and details of gene
prediction. Gene names on a green background indicate loci whose current
annotation (September 2005) disagrees with the linked model (Cvrckova
et al., 2004), which is likely to be correct. Gene names on orange background
indicate loci where current annotation represents an improvement against the
version published in the above cited paper, genes on a darker yellow background
denote loci where the two models differ but it is unclear which one is correct
(in such casese I do prefer the original annotation but show our prediction
as well).
A file of annotated locus structures from the above cited paper can be accessed
here.
Gene
|
Synonyms
|
Number of coding exons
|
AGI locus (BAC locus)
Click for current TAIR view. |
Genomic sequence(s)
|
cDNA sequence(s) **
|
Notes
|
|
AFH1, AtFORMIN8 |
4
|
At3g25500
(MWL2.16) |
AB025639
|
R30345,
Z18512,
AV544190,
AV546860,
AV567287,
AV548463,
AV528187,
AV552669,
AV522684,
AV546377,
Z17974,
AF174427
|
|
|
AtFORMIN2 |
4
|
At2g43800
(F18O19.5) |
AC002333 |
AV545883,
AI997606,
(NM_129942)
|
|
|
AtFORMIN3 |
6
|
At4g15200
(FCAALL.218) |
Z97338 |
AV557654,(BK004092)
|
errors in genomic sequence, 5´end may be missing |
|
AtFORMIN4 |
2
|
At1g24150
(F3I6.8) |
AC002396 |
AI998115,
BE526568,
(BK004101)
|
error in genomic sequence |
|
AtFORMIN5 |
6-7
|
At5g54650
(MRB17.15) |
AB016879 |
BE522210,
AV548458,
AV528139,
AY042801 |
alternative splicing |
|
AtFORMIN6 |
4
|
At5g67470
(K9I9.3) |
AB013390 |
F19772,
AV532694,
AV566231,
AY337456 |
|
|
AtFORMIN7 |
2
|
At1g59910
(F23H11.22) |
AC007258 |
AV542102,
AV540964,
AV548598,
BT010460 |
|
|
AtFORMIN1 |
2
|
At1g70140
(F20P5.14) |
AC002062 |
T43335,
AA395204,
AY050956,
(NM_105682)
|
|
|
|
4
|
At5g48360
(K23F3.8) |
AP000372 |
BE526931,
AK118458 |
|
|
|
3
|
At3g07540
(F21O3.25) |
AC009853 |
AV563517,
AY050396 |
|
|
|
4
|
At3g05470
(F22F7.8) |
AC009606 |
none so far, (NM_111420) |
|
|
|
12
|
At1g42980
(F13A11.4) |
AC068324 |
BX817649,
(NM_103457)
|
frameshift in the full-length cDNA |
|
|
14
|
At5g58160
(MCK7.3) |
AB019228 |
N65121,
AA394985,
(BK004099)
|
|
|
|
17
|
At1g31810
(F5M6.18) |
AC079041 |
AV528978,
AV548682,
AV548850,
(BK004098)
|
|
|
|
13+12
|
At5g07650
(MBK20.9) |
AB010070 |
AV543211,
(BK004097),
(BK004096),
(NM_120847)
|
the locus may span two genes, AtFH15a and AtFH15b |
|
|
16
|
At5g07770
(MBK20.23) |
AB010070
+ AB005249;
NC_003076
(reference) |
AV526999,
AV527418,
AV520899,
AV529184,
AV520610,
(NM_120859)
|
|
|
|
16
|
At3g32400
(F1D9.13) |
AP002460 |
none so far, (BK004094) |
located within a cluster of pseudogenes |
|
|
16
|
At2g25050
(F27C12.3) |
AC006585 |
none so far, (NM_128062) |
|
|
|
14
|
At5g07780
(MXM12.2) |
AB005249 |
AI998622,
AK221526
|
|
|
|
15
|
At5g07740
(MBK20.20)
|
AB010070 |
AV558046,
BE525429,
AV554850,
(BK004102)
|
alternative splicing |
|
|
24
|
At5g07760
(MBK20.22) |
AB010070 |
none so far, (NM_120858) |
|
** This is not necessarily a full list, rather a documentation of the data
(incl. selected ESTs) used to reconstruct the gene structures back in 2004 (exceptions,
if any, will be noted in the locus structure pages). Empirically sequenced full-length
cDNAs in bold, theoretical gene models in brackets.