Plant formins homepage

Arabidopsis formin homologues: genes, sequences and clones:

dead version 2.01, archived Dec20, 2007


Click gene names for a graphical view of locus structure and details of gene prediction. Gene names on a green background indicate loci whose current annotation (September 2005) disagrees with the linked model (Cvrckova et al., 2004), which is likely to be correct. Gene names on orange background indicate loci where current annotation represents an improvement against the version published in the above cited paper, genes on a darker yellow background denote loci where the two models differ but it is unclear which one is correct (in such casese I do prefer the original annotation but show our prediction as well).

A file of annotated locus structures from the above cited paper can be accessed here.

Click here for more information on proteins encoded by these loci, here for compilation of protein sequences (as published in Cvrckova et al., 2004).

Gene

Synonyms

Number of coding exons

AGI locus (BAC locus)

Click for current TAIR view.

Genomic sequence(s)

cDNA sequence(s) **

Notes

AtFH1

AFH1, AtFORMIN8
4
At3g25500 (MWL2.16)

AB025639

R30345, Z18512, AV544190, AV546860, AV567287, AV548463, AV528187, AV552669, AV522684, AV546377, Z17974, AF174427  

AtFH2

AtFORMIN2
4
At2g43800 (F18O19.5) AC002333 AV545883, AI997606, (NM_129942)

AtFH3

AtFORMIN3
6
At4g15200 (FCAALL.218) Z97338 AV557654,(BK004092) errors in genomic sequence, 5´end may be missing

AtFH4

AtFORMIN4
2
At1g24150 (F3I6.8) AC002396 AI998115, BE526568, (BK004101) error in genomic sequence

AtFH5

AtFORMIN5
6-7
At5g54650 (MRB17.15) AB016879 BE522210, AV548458, AV528139, AY042801 alternative splicing

AtFH6

AtFORMIN6
4
At5g67470 (K9I9.3) AB013390 F19772, AV532694, AV566231, AY337456

AtFH7

AtFORMIN7
2
At1g59910 (F23H11.22) AC007258 AV542102, AV540964, AV548598, BT010460

AtFH8

AtFORMIN1
2
At1g70140 (F20P5.14) AC002062 T43335, AA395204, AY050956, (NM_105682)

AtFH9

4
At5g48360 (K23F3.8) AP000372 BE526931, AK118458

AtFH10

3
At3g07540 (F21O3.25) AC009853 AV563517, AY050396

AtFH11

4
At3g05470 (F22F7.8) AC009606 none so far, (NM_111420)

AtFH12

12
At1g42980 (F13A11.4) AC068324 BX817649, (NM_103457) frameshift in the full-length cDNA

AtFH13

14
At5g58160 (MCK7.3) AB019228 N65121, AA394985, (BK004099)

AtFH14

17
At1g31810 (F5M6.18) AC079041 AV528978, AV548682, AV548850, (BK004098)

AtFH15*

13+12
At5g07650 (MBK20.9) AB010070 AV543211, (BK004097), (BK004096), (NM_120847) the locus may span two genes, AtFH15a and AtFH15b

AtFH16*

16
At5g07770 (MBK20.23) AB010070 + AB005249; NC_003076 (reference) AV526999, AV527418, AV520899, AV529184, AV520610, (NM_120859)

AtFH17

16
At3g32400 (F1D9.13) AP002460 none so far, (BK004094) located within a cluster of pseudogenes

AtFH18

16
At2g25050 (F27C12.3) AC006585 none so far, (NM_128062)

AtFH19*

14
At5g07780 (MXM12.2) AB005249 AI998622, AK221526

AtFH20*

15

At5g07740 (MBK20.20)

AB010070 AV558046, BE525429, AV554850, (BK004102) alternative splicing

AtFH21*

24
At5g07760 (MBK20.22) AB010070 none so far, (NM_120858)

*Genes within the Chromosome 5 formin cluster.

** This is not necessarily a full list, rather a documentation of the data (incl. selected ESTs) used to reconstruct the gene structures back in 2004 (exceptions, if any, will be noted in the locus structure pages). Empirically sequenced full-length cDNAs in bold, theoretical gene models in brackets.