Domains:
- signal peptide/anchor (SP)
- transmembrane (TM)
- FH2 (FH2)
- putative FH1 (FH1) -
purple in the schematic
- other low complexity
Key to domain abbreviations can be found here.
>AtFH9
MQNFWFAIFFFLLTCAPPSPLSYASTVTLSRRLLYDYESPLPLPLSPISPPFFPLESSPP
SPPPPLPPTPPTTFAVFPTFPANISALVLPRSSKPHHTSPTLLLPALSAVLVIATVIGLA
LFLYGRHRGQTRHLKNSHCSSSNTSSYGDEQSHITTNFNMAATTSPSEVFYLNTEESDHI
RTGGTFFLKQDSPEIRPLPPLPPRSFHHNNYETEVNEEDEEEEEDVFFSPMASLPGSANS
SPSHSCSSSCSGWVSPARSFSITMSPPNPRYSDATNLQSPSPERLRVRKNYNGNGSSSLR
MFSFWNQNMGFGFPRISSASTSPDRGFIRTPLSSLYSSVSTSPDGLFRKFLDSSPPIWND
FSRNVKSVLLSHTASSRRDFVINIGESSSQQSKVPALPPPTRPPPLVPPSQPFVVQNDVK
KQSFSDQPPKQLHWERLRSSSSNKEMVETMFIANSSNPRDLPIQNQVLDPRKAQNIATLL
QLLNLSTKDVCQALLDGDCDVLGAELLECLSRLAPSKEEERKLKSFSDGSEIGPAERFLK
ELLHVPFVFKRVDALLFVANFHSEIKRLRKSFSVVQVACEELRNSRMFSILLEAILKTGN
MMSVRTNRCGDADAFKLDTLLKLVDVKGLDGRSSLLHFVVQEMMKSEGSVRALEGIRNLN
TELSNVKKSADIEYGVLRSNVSRICQGLKNIEALLLLSEESGSYGDQWLKFKERMTRFLK
TAAEEIVKIKIRESSTLSALEEVTEQFHGDASKEGHTMRIFMIVRDFLSVLDQVCKEMGD
Note:
According to a TopPred
analysis,
the signal sequence should end up embedded in a membrane, resulting in
an "N-end out" topology, which would render the first low complexity motif
in the cytoplasm. However, an alternative model suggesting an extra transmembrane
segment would allow an inverted topology of the N-terminal portion, and
reliable prediction cannot be therefore made.
